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| | CAMDA 2009 Conference Agenda | Monday, Oct. 5, 2009 | | Time | Speaker | Title | | 8:30-9:00 | Registration and breakfast (sponsored by Isilon Systems) | | 9:00-9:10 | Warren Kibbe | Welcome: Ten Years of CAMDA, Slides, | | 9:10-10:00 | Martin Morgan (Keynote) | Computational Challenges in the Analysis of Short Read DNA Sequences, Slides | | 10:00-10:50 | Mark B Gerstein (Keynote) | Human Genome Annotation, Slides | | 10:50-11:10 | Coffe Break (sponsored by Isilon Systems) | | Morning Session (Session Chair: Chun-Yu Liu) | | 11:10-11:50 | Jean-Francois Pessiot | PeakRegressor identifies composite sequence motifs responsible for STAT1 binding sites and their potential rSNPs, Slides | | 11:50-12:30 | Sunduz Keles | A Statistical Framework for the Analysis of ChIP-Seq Data | | 12:30-14:00 | Lunch / Sponsered talk (13:00 – 14:00) by Isilon Systems, Slides | | Afternoon Session (Session Chair: Denise Scholtens) | | 14:00-14:40 | Kun Huang | Comparative Analysis of ChIP-seq Data using Mixture Model, Slides | | 14:40-15:20 | Pingzhao Hu | Scoring of ChIP-seq experiments by modeling large-scale correlated tests, Slides | | 15:20-15:40 | Coffe Break | | 15:40-16:20 | Yanen Li | SeqMapReduce: software and web service for accelerating short sequence mapping | | 16:20-17:00 | Yunlong Liu | STAT1 regulates microRNA transcription in interferon γ – stimulated HeLa cells, Slides | | 17:10-18:00 | Tutorial: 'Analyzing high-throughput short sequences with Bioconductor'; Download R code, Tutorial , by Martin Morgan |
Tuesday, Oct. 6, 2009 | | Time | Speaker | Title | | 8:30-9:00 | Breakfast | | Morning Session (Session Chair: Julie Zhu) | | 9:00-9:40 | Robert Grossman | Cloud-based Services for Large Scale Analysis of Sequence and Expression Data: Lessons Learned from Cistrack | | 9:40-10:20 | Colin N. Dewey | Transcriptome analysis methods for RNA-Seq data, Slides | | 10:20-10:40 | Coffe Break | | 10:40-11:20 | Susmita Datta | Next Generation Sequencing: Statistical Challenges and Opportunities, Slides | | 11:20-12:10 | Bento Soares (Invited lecture) | Large-scale sequencing-based epigenomic analysis of Alu repeats in normal and in tumor cells | | 12:10-12:20 | CAMDA2009 award annoucement | | 12:20-14:00 | Lunch / Sponsered talk (13:00 – 14:00) by XtremeData, Slides | | Afternoon Session (Session Chair: Gang Feng) | | 14:00-14:40 | Peter Larsen | Using Next Generation Sequencing Data for Structural Annotation of L. bicolor Mycorrhizal Transcriptome, Slides | | 14:40-15:20 | Kun Huang | Parallel Computing Strategies for Sequence Mapping of NGS Data, Slides | | 15:20-15:40 | Coffe Break | | 15:40-16:20 | Doug Cork, Steven Lembark* | Comparative Analysis of Pol II and HIV-1 Sequences Using the W-Curve | | 16:20-17:00 | Fahad Saeed | How to Multiple Align Huge Number of Short Reads, Slides | | 17:00 | Close of conference |
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