VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing. Submitted by iguillen on Tue, 06/18/2019 - 11:11 Medina I, De Maria A, Bleda M, et al. VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing. Nucleic Acids Res. 2012;40(Web Server issue):W54-8. doi:10.1093/nar/gks572.
Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform. Submitted by iguillen on Tue, 06/18/2019 - 10:48 Torres JSalavert, Espert IBlanquer, Domínguez ATomás, et al. Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform. IEEE/ACM Trans Comput Biol Bioinform. 2012;9(4):1245-56. doi:10.1109/TCBB.2012.49.
The protease MT1-MMP drives a combinatorial proteolytic program in activated endothelial cells. Submitted by iguillen on Tue, 06/18/2019 - 10:47 Koziol A, Gonzalo P, Mota A, et al. The protease MT1-MMP drives a combinatorial proteolytic program in activated endothelial cells. FASEB J. 2012;26(11):4481-94. doi:10.1096/fj.12-205906.
SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. Submitted by iguillen on Tue, 06/18/2019 - 10:45 De Baets G, Van Durme J, Reumers J, et al. SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. Nucleic Acids Res. 2012;40(Database issue):D935-9. doi:10.1093/nar/gkr996.
Inferring the regulatory network behind a gene expression experiment. Submitted by iguillen on Tue, 06/18/2019 - 10:43 Bleda M, Medina I, Alonso R, De Maria A, Salavert F, Dopazo J. Inferring the regulatory network behind a gene expression experiment. Nucleic Acids Res. 2012;40(Web Server issue):W168-72. doi:10.1093/nar/gks573.
IL1β induces mesenchymal stem cells migration and leucocyte chemotaxis through NF-κB. Submitted by iguillen on Tue, 06/18/2019 - 10:41 Carrero R, Cerrada I, Lledó E, et al. IL1β induces mesenchymal stem cells migration and leucocyte chemotaxis through NF-κB. Stem Cell Rev Rep. 2012;8(3):905-16. doi:10.1007/s12015-012-9364-9.
Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease. Submitted by iguillen on Tue, 06/18/2019 - 10:38 Fernández RMa, Bleda M, Núñez-Torres R, et al. Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung's disease. Orphanet J Rare Dis. 2012;7:103. doi:10.1186/1750-1172-7-103.
Extensive translatome remodeling during ER stress response in mammalian cells. Submitted by iguillen on Tue, 06/18/2019 - 10:37 Ventoso I, Kochetov A, Montaner D, Dopazo J, Santoyo J. Extensive translatome remodeling during ER stress response in mammalian cells. PLoS One. 2012;7(5):e35915. doi:10.1371/journal.pone.0035915.
Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua. Submitted by iguillen on Tue, 06/18/2019 - 10:35 Sundaram AYM, Kiron V, Dopazo J, Fernandes JMO. Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua. BMC Evol Biol. 2012;12:256. doi:10.1186/1471-2148-12-256.
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments. Submitted by iguillen on Tue, 06/18/2019 - 10:35 García-Alonso L, Alonso R, Vidal E, et al. Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments. Nucleic Acids Res. 2012;40(20):e158. doi:10.1093/nar/gks699.
