01470nas a2200169   4500008004100000245005400041210005300095300001000148490000700158520082200165653003700987653011501024100002401139700001801163700001301181856010601194       2001                        eng d00aDBAli: a database of protein structure alignments0 aDBAli a database of protein structure alignments  a746-70 v173 aSUMMARY: The DBAli database includes approximately 35000 alignments of pairs of protein structures from SCOP (Lo Conte et al., Nucleic Acids Res., 28, 257-259, 2000) and CE (Shindyalov and Bourne, Protein Eng., 11, 739-747, 1998). DBAli is linked to several resources, including Compare3D (Shindyalov and Bourne, http://www.sdsc.edu/pb/software.htm, 1999) and ModView (Ilyin and Sali, http://guitar.rockefeller.edu/ModView/, 2001) for visualizing sequence alignments and structure superpositions. A flexible search of DBAli by protein sequence and structure properties allows construction of subsets of alignments suitable for a number of applications, such as benchmarking of sequence-sequence and sequence-structure alignment methods under a variety of conditions. AVAILABILITY: http://guitar.rockefeller.edu/DBAli/10aComputational Biology *Databases10aProtein Proteins/*chemistry/*genetics Sequence Alignment/*statistics & numerical data Software Software Design1 aMarti-Renom, M., A.1 aIlyin, V., A.1 aSali, A.  uhttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11524379