%0 Journal Article %J Nucleic Acids Res %D 2003 %T Tools for comparative protein structure modeling and analysis %A Eswar, N. %A John, B. %A Mirkovic, N. %A Fiser, A. %A Ilyin, V. A. %A Pieper, U. %A Stuart, A. C. %A M. A. Marti-Renom %A Madhusudhan, M. S. %A Yerkovich, B. %A Sali, A. %K Amino Acid *Software *Structural Homology %K Internet Models %K Molecular Protein Folding Proteins/chemistry Reproducibility of Results Sequence Alignment Sequence Homology %K Protein Systems Integration %X The following resources for comparative protein structure modeling and analysis are described (http://salilab.org): MODELLER, a program for comparative modeling by satisfaction of spatial restraints; MODWEB, a web server for automated comparative modeling that relies on PSI-BLAST, IMPALA and MODELLER; MODLOOP, a web server for automated loop modeling that relies on MODELLER; MOULDER, a CPU intensive protocol of MODWEB for building comparative models based on distant known structures; MODBASE, a comprehensive database of annotated comparative models for all sequences detectably related to a known structure; MODVIEW, a Netscape plugin for Linux that integrates viewing of multiple sequences and structures; and SNPWEB, a web server for structure-based prediction of the functional impact of a single amino acid substitution. %B Nucleic Acids Res %V 31 %P 3375-80 %G eng %U http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12824331